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Matrix Science mascot server v2.5.1
Mascot Server V2.5.1, supplied by Matrix Science, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/mascot+server+v2%2E5%2E1/mascot+server/pmc12208663-304-15-18
Average 90 stars, based on 1 article reviews
mascot server v2.5.1 - by Bioz Stars, 2026-10
90/100 stars

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Related Articles

Tandem Mass Spectroscopy:

Article Title: Peripheral blood CD4+CCR6+ compartment differentiates HIV-1 infected or seropositive elite controllers from long-term successfully treated individuals
Article Snippet: MS/MS 443 scans were obtained using high collision energy of 34%, resolution of 45,000 and maximum IT of 86 444 ms. 445 Proteins were searched against both SwissProt human and HIV-1 databases using the search engine 446 Mascot Server v2.5.1 (MatrixScience Ltd) in Proteome Discoverer v2.5 (ThermoFisher Scientific) 447 software environment allowing maximum two missed cleavages.

Article Title: Coordinated pyruvate kinase activity is crucial for metabolic adaptation and cell survival during mitochondrial dysfunction
Article Snippet: Proteins were searched against SwissProt mouse database using the search engine Mascot Server v2.5.1 (MatrixScience Ltd, UK) in Proteome Discoverer v2.4 (ThermoFisher Scientific) software environment allowing maximum two missed cleavages.

Article Title: Surgical Trauma in Mice Modifies the Content of Circulating Extracellular Vesicles
Article Snippet: Acquired raw data files were analyzed using Proteome Discoverer v2.4 (ThermoFisher Scientific) with Mascot Server v2.5.1 (Matrix Science Ltd., UK) search engine against mouse protein database (SwissProt).

Article Title: Tissue-specific responses to TFAM and mtDNA copy number manipulation in prematurely ageing mice
Article Snippet: Acquired raw data files were analyzed using Proteome Discoverer v2.4 (Thermo Fisher Scientific) with the Mascot Server v2.5.1 (Matrix Science Ltd., UK) search engine against mouse protein database (SwissProt).

Article Title: Integrative proteo-transcriptomic and immunophenotyping signatures of HIV-1 elite control phenotype: A cross-talk between glycolysis and HIF signaling
Article Snippet: The raw data files were directly loaded in Proteome Discoverer v2.2 (ThermoFisher Scientific) and searched against human SwissProt protein databases (21,008 entries) using the Mascot Server v2.5.1 search engine (Matrix Science Ltd.) ( ).

Article Title: Peripheral blood CD4 + CCR6 + compartment differentiates HIV-1 infected or seropositive elite controllers from long-term successfully treated individuals
Article Snippet: MS/MS scans were obtained using high collision energy of 34%, resolution of 45,000 and maximum IT of 86 ms. Proteins were searched against both SwissProt human and HIV-1 databases using the search engine Mascot Server v2.5.1 (MatrixScience Ltd) in Proteome Discoverer v2.5 (ThermoFisher Scientific) software environment allowing maximum two missed cleavages.

Article Title: Brain endothelial cells exposure to malaria parasites links type I interferon signalling to antigen presentation, immunoproteasome activation, endothelium disruption, and cellular metabolism
Article Snippet: Acquired raw data files were analyzed using Proteome Discoverer v2.5 (Thermo Fisher Scientific) with Mascot Server v2.5.1 (Matrix Science Ltd., UK) search engine against mouse protein database (SwissProt).

Article Title: Proteomic analysis of the urothelial cancer landscape
Article Snippet: Acquired raw data files were analyzed using Proteome Discoverer v2.5 (Thermo Fisher Scientific) with Mascot Server v2.5.1 (Matrix Science Ltd., UK) search engine against the human protein database (SwissProt) and a separate fasta file composed of 245 most common contaminant proteins (obtained from the MaxQuant software).

Software:

Article Title: Peripheral blood CD4+CCR6+ compartment differentiates HIV-1 infected or seropositive elite controllers from long-term successfully treated individuals
Article Snippet: MS/MS 443 scans were obtained using high collision energy of 34%, resolution of 45,000 and maximum IT of 86 444 ms. 445 Proteins were searched against both SwissProt human and HIV-1 databases using the search engine 446 Mascot Server v2.5.1 (MatrixScience Ltd) in Proteome Discoverer v2.5 (ThermoFisher Scientific) 447 software environment allowing maximum two missed cleavages.

Article Title: Coordinated pyruvate kinase activity is crucial for metabolic adaptation and cell survival during mitochondrial dysfunction
Article Snippet: Proteins were searched against SwissProt mouse database using the search engine Mascot Server v2.5.1 (MatrixScience Ltd, UK) in Proteome Discoverer v2.4 (ThermoFisher Scientific) software environment allowing maximum two missed cleavages.

Article Title: Surgical Trauma in Mice Modifies the Content of Circulating Extracellular Vesicles
Article Snippet: Acquired raw data files were analyzed using Proteome Discoverer v2.4 (ThermoFisher Scientific) with Mascot Server v2.5.1 (Matrix Science Ltd., UK) search engine against mouse protein database (SwissProt).

Article Title: Tissue-specific responses to TFAM and mtDNA copy number manipulation in prematurely ageing mice
Article Snippet: Acquired raw data files were analyzed using Proteome Discoverer v2.4 (Thermo Fisher Scientific) with the Mascot Server v2.5.1 (Matrix Science Ltd., UK) search engine against mouse protein database (SwissProt).

Article Title: Integrative proteo-transcriptomic and immunophenotyping signatures of HIV-1 elite control phenotype: A cross-talk between glycolysis and HIF signaling
Article Snippet: The raw data files were directly loaded in Proteome Discoverer v2.2 (ThermoFisher Scientific) and searched against human SwissProt protein databases (21,008 entries) using the Mascot Server v2.5.1 search engine (Matrix Science Ltd.) ( ).

Article Title: Peripheral blood CD4 + CCR6 + compartment differentiates HIV-1 infected or seropositive elite controllers from long-term successfully treated individuals
Article Snippet: MS/MS scans were obtained using high collision energy of 34%, resolution of 45,000 and maximum IT of 86 ms. Proteins were searched against both SwissProt human and HIV-1 databases using the search engine Mascot Server v2.5.1 (MatrixScience Ltd) in Proteome Discoverer v2.5 (ThermoFisher Scientific) software environment allowing maximum two missed cleavages.

Article Title: Brain endothelial cells exposure to malaria parasites links type I interferon signalling to antigen presentation, immunoproteasome activation, endothelium disruption, and cellular metabolism
Article Snippet: Acquired raw data files were analyzed using Proteome Discoverer v2.5 (Thermo Fisher Scientific) with Mascot Server v2.5.1 (Matrix Science Ltd., UK) search engine against mouse protein database (SwissProt).

Article Title: Proteomic analysis of the urothelial cancer landscape
Article Snippet: Acquired raw data files were analyzed using Proteome Discoverer v2.5 (Thermo Fisher Scientific) with Mascot Server v2.5.1 (Matrix Science Ltd., UK) search engine against the human protein database (SwissProt) and a separate fasta file composed of 245 most common contaminant proteins (obtained from the MaxQuant software).

Clinical Proteomics:

Article Title: Peripheral blood CD4+CCR6+ compartment differentiates HIV-1 infected or seropositive elite controllers from long-term successfully treated individuals
Article Snippet: MS/MS 443 scans were obtained using high collision energy of 34%, resolution of 45,000 and maximum IT of 86 444 ms. 445 Proteins were searched against both SwissProt human and HIV-1 databases using the search engine 446 Mascot Server v2.5.1 (MatrixScience Ltd) in Proteome Discoverer v2.5 (ThermoFisher Scientific) 447 software environment allowing maximum two missed cleavages.

Article Title: Coordinated pyruvate kinase activity is crucial for metabolic adaptation and cell survival during mitochondrial dysfunction
Article Snippet: Proteins were searched against SwissProt mouse database using the search engine Mascot Server v2.5.1 (MatrixScience Ltd, UK) in Proteome Discoverer v2.4 (ThermoFisher Scientific) software environment allowing maximum two missed cleavages.

Article Title: Surgical Trauma in Mice Modifies the Content of Circulating Extracellular Vesicles
Article Snippet: Acquired raw data files were analyzed using Proteome Discoverer v2.4 (ThermoFisher Scientific) with Mascot Server v2.5.1 (Matrix Science Ltd., UK) search engine against mouse protein database (SwissProt).

Article Title: Tissue-specific responses to TFAM and mtDNA copy number manipulation in prematurely ageing mice
Article Snippet: Acquired raw data files were analyzed using Proteome Discoverer v2.4 (Thermo Fisher Scientific) with the Mascot Server v2.5.1 (Matrix Science Ltd., UK) search engine against mouse protein database (SwissProt).

Article Title: Integrative proteo-transcriptomic and immunophenotyping signatures of HIV-1 elite control phenotype: A cross-talk between glycolysis and HIF signaling
Article Snippet: The raw data files were directly loaded in Proteome Discoverer v2.2 (ThermoFisher Scientific) and searched against human SwissProt protein databases (21,008 entries) using the Mascot Server v2.5.1 search engine (Matrix Science Ltd.) ( ).

Article Title: Peripheral blood CD4 + CCR6 + compartment differentiates HIV-1 infected or seropositive elite controllers from long-term successfully treated individuals
Article Snippet: MS/MS scans were obtained using high collision energy of 34%, resolution of 45,000 and maximum IT of 86 ms. Proteins were searched against both SwissProt human and HIV-1 databases using the search engine Mascot Server v2.5.1 (MatrixScience Ltd) in Proteome Discoverer v2.5 (ThermoFisher Scientific) software environment allowing maximum two missed cleavages.

Article Title: Brain endothelial cells exposure to malaria parasites links type I interferon signalling to antigen presentation, immunoproteasome activation, endothelium disruption, and cellular metabolism
Article Snippet: Acquired raw data files were analyzed using Proteome Discoverer v2.5 (Thermo Fisher Scientific) with Mascot Server v2.5.1 (Matrix Science Ltd., UK) search engine against mouse protein database (SwissProt).

Article Title: Proteomic analysis of the urothelial cancer landscape
Article Snippet: Acquired raw data files were analyzed using Proteome Discoverer v2.5 (Thermo Fisher Scientific) with Mascot Server v2.5.1 (Matrix Science Ltd., UK) search engine against the human protein database (SwissProt) and a separate fasta file composed of 245 most common contaminant proteins (obtained from the MaxQuant software).



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Image Search Results


Journal: iScience

Article Title: Integrative proteo-transcriptomic and immunophenotyping signatures of HIV-1 elite control phenotype: A cross-talk between glycolysis and HIF signaling

doi: 10.1016/j.isci.2021.103607

Figure Lengend Snippet:

Article Snippet: Mascot Server search engine v2.5.1 , Matrix Science Ltd , https://www.matrixscience.com.

Techniques: Clinical Proteomics, Software